OneGenE Vitis is a user-friendly and interactive web resource for analyzing grapevine (Vitis spp.) gene networks. It finds causal relationships among genes using the transcriptomic data.

OneGenE is based on the PC-algorithm, (Spirtes and Glymour, 1991), a Gaussian graphical model (GGM) that finds causal interactions from observational data (see gene@home).

OneGenExp Vitis is designed to provide the OneGenE-computed expansion lists of the gene(s) specified by the user, computed on two transcriptomic datasets, the Vespucci datasets released in 2016 and 2022.

 

 

If you use OneGenE for your reseach, please cite:

Pilati, S.; Malacarne, G.; Navarro-Payá, D.; Tomè, G.; Riscica, L.; Cavecchia, V.; Matus, J.T.; Moser, C.; Blanzieri, E. Vitis OneGenE: A Causality-Based Approach to Generate Gene Networks in Vitis vinifera Sheds Light on the Laccase and Dirigent Gene Families. Biomolecules 2021, 11, 1744.  https://doi.org/10.3390/biom11121744

Pirrello, C. et al., in preparation.