Lists of our publications concerning the computing system, algorithms’ optimization and biological applications of NES2RA and OneGenE. We would like to thank the gene@home volunteers on TN-Grid for their invaluable contribution to the development of this project.
- Erculiani L, Galante F, Gallo C et al. Discovering candidates for gene network expansion by variable subsetting and ranking aggregation [version 1; not peer reviewed]. F1000Research 2015, 4(ISCB Comm J):562 (poster) (https://doi.org/10.7490/f1000research.1110311.1)
- Asnicar, Francesco; Erculiani, Luca; Galante, Francesca; Gallo, Caterina; Masera, Luca; Morettin, Paolo; Sella, Nadir; Semeniuta, Stanislau; Tolio, Thomas; Malacarne, Giulia; Engelen, Kristof; Argentini, Andrea; Cavecchia, Valter; Moser, Claudio; Blanzieri, Enrico, “Discovering Candidates for Gene Network Expansion by Distributed Volunteer Computing” in Proceedings 13th IEEE International Symposium on Parallel and Distributed Processing with Applications, ISPA 2015, Piscataway, NJ: IEEE, 2015, p. 248-253. – ISBN: 978-1-4673-7952-6. Atti di: ISPA 2015, Helsinki, 20th-22nd August 2015. – URL: https://ieeexplore.ieee.org/document/7345656/ . – DOI: 10.1109/Trustcom.2015.640
- Asnicar, Francesco; Sella, Nadir; Masera, Luca; Morettin, Paolo; Tolio, Thomas; Semeniuta, Stanislau; Moser, Claudio; Blanzieri, Enrico; Cavecchia, Valter, “TN-Grid and gene@home Project: Volunteer Computing for Bioinformatics” in BOINC:FAST 2015 International Conference BOINC:FAST 2015 Proceedings of the Second International Conference BOINC-based High Performance Computing: Fundamental Research and Development (BOINC:FAST 2015) Petrozavodsk, Russia, September 14-18, 2015., Aachen: Aachen University, 2015, p. 1-15. – (CEUR WORKSHOP PROCEEDINGS). Atti di: BOINC-FAST, Petrozavodsk, Russia, 14-18 September 2015
- Asnicar F, Masera L, Coller E, et al. NES2RA: Network expansion by stratified variable subsetting and ranking aggregation. The International Journal of High Performance Computing Applications. 2018;32(3):380-392. doi:10.1177/1094342016662508
- Malacarne G, Pilati S, Valentini S, Asnicar F, Moretto M, Sonego P, Masera L, Cavecchia V, Blanzieri E and Moser C (2018) Discovering Causal Relationships in Grapevine Expression Data to Expand Gene Networks. A Case Study: Four Networks Related to Climate Change. Front. Plant Sci. 9:1385. doi: 10.3389/fpls.2018.01385
- Asnicar, Francesco; Masera, Luca; Pistore, Davide; Valentini, Samuel; Cavecchia, Valter; Blanzieri, Enrico, “OneGenE: Regulatory Gene Network Expansion via Distributed Volunteer Computing on BOINC” in Proceedings 27th Euromicro International Conference on Parallel, Distributed and Network-Based Processing, PDP 2019, Piscataway, NJ: Institute of Electrical and Electronics Engineers Inc., 2019, p. 315-322. – ISBN: 9781728116440. Atti di: PDP 2019, Pavia, 13th-15th February 2019. – URL: https://ieeexplore.ieee.org/document/8671629 . – DOI: 10.1109/EMPDP.2019.8671629
- E. Blanzieri et al., “A Computing System for Discovering Causal Relationships Among Human Genes to Improve Drug Repositioning,” in IEEE Transactions on Emerging Topics in Computing, vol. 9, no. 4, pp. 1667-1682, 1 Oct.-Dec. 2021, doi: 10.1109/TETC.2020.3031024.
- Pilati, S.; Malacarne, G.; Navarro-Payá, D.; Tomè, G.; Riscica, L.; Cavecchia, V.; Matus, J.T.; Moser, C.; Blanzieri, E. Vitis OneGenE: A Causality-Based Approach to Generate Gene Networks in Vitis vinifera Sheds Light on the Laccase and Dirigent Gene Families. Biomolecules 2021, 11, 1744. https://doi.org/10.3390/biom11121744
- Pirrello, C.; Malacarne, G.; Moretto, M.; Lenzi, L.; Perazzolli, M.; Zeilmaker, T.; Van den Ackerveken, G.; Pilati, S.; Moser, C.; Giacomelli, L. Grapevine DMR6-1 Is a Candidate Gene for Susceptibility to Downy Mildew. Biomolecules 2022, 12, 182. https://doi.org/10.3390/biom12020182
If you don’t have access to any of the above papers, please send a message to us and we will send it to you by e-mail.